Package: CaPO4Sim 0.2.1

CaPO4Sim: A Virtual Patient Simulator in the Context of Calcium and Phosphate Homeostasis

Explore calcium (Ca) and phosphate (Pi) homeostasis with two novel 'Shiny' apps, building upon on a previously published mathematical model written in C, to ensure efficient computations. The underlying model is accessible here <https://pubmed.ncbi.nlm.nih.gov/28747359/)>. The first application explores the fundamentals of Ca-Pi homeostasis, while the second provides interactive case studies for in-depth exploration of the topic, thereby seeking to foster student engagement and an integrative understanding of Ca-Pi regulation.

Authors:David Granjon [aut, cre, cph], Diane de Zélicourt [cph], Vartan Kurtcuoglu [cph], Olivier Bonny [cph], François Verrey [cph], University of Lausanne [fnd], University of Zurich [fnd], Kidney NCCR.CH [fnd], The Interface Group [cph], RinteRface [cph]

CaPO4Sim_0.2.1.tar.gz
CaPO4Sim_0.2.1.zip(r-4.5)CaPO4Sim_0.2.1.zip(r-4.4)CaPO4Sim_0.2.1.zip(r-4.3)
CaPO4Sim_0.2.1.tgz(r-4.4-any)CaPO4Sim_0.2.1.tgz(r-4.3-any)
CaPO4Sim_0.2.1.tar.gz(r-4.5-noble)CaPO4Sim_0.2.1.tar.gz(r-4.4-noble)
CaPO4Sim_0.2.1.tgz(r-4.4-emscripten)CaPO4Sim_0.2.1.tgz(r-4.3-emscripten)
CaPO4Sim.pdf |CaPO4Sim.html
CaPO4Sim/json (API)
NEWS

# Install 'CaPO4Sim' in R:
install.packages('CaPO4Sim', repos = c('https://divadnojnarg.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/divadnojnarg/capo4sim/issues

On CRAN:

4.73 score 41 stars 13 scripts 266 downloads 36 exports 83 dependencies

Last updated 3 months agofrom:fafe376d2a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-winOKNov 16 2024
R-4.5-linuxOKNov 16 2024
R-4.4-winOKNov 16 2024
R-4.4-macOKNov 16 2024
R-4.3-winOKNov 16 2024
R-4.3-macOKNov 16 2024

Exports:%>%arrow_lightingdiseaseSelectdiseaseSelectUiextract_running_simfullScreenfullScreenUIgenerate_edgesgenerate_networkgenerate_nodesgenerate_notificationgenerate_userFieldsglossaryCaPO4glossaryCaPO4UihelpCaPO4helpCaPO4UiinfosinfosUiis_emptymake_plot_hypoD3make_plot_hypoparamake_plot_php1myCarouselnetworkCaPO4networkCaPO4UinetworkOptionsnetworkOptionsUiplotBoxplotBoxUirun_CaPO4SimskinSelectskinSelectUiuserInfouserInfoUivideovideoUi

Dependencies:askpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprintrojsrlangrmarkdownsassscalesshinyshinycssloadersshinyjquishinyjsshinyWidgetssourcetoolsstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitevisNetworkwithrxfunxtableyaml

Readme and manuals

Help Manual

Help pageTopics
Highlight arrows for steady state eventsarrow_lighting
CaPO4SimCaPO4Sim-package CaPO4Sim
Create a checkbox for diseaseSelectUidiseaseCheckBox
Create a disease selector server logicdiseaseSelect
Create a disease selector UI modulediseaseSelectUi
Extract the current running simulationextract_running_sim
Create a fullScreen server logicfullScreen
Create a fullScreen UI modulefullScreenUI
CaPO4 Edges Generatorgenerate_edges
CaPO4 Network Generatorgenerate_network
CaPO4 Nodes Generatorgenerate_nodes
Notifications Generator for CaPO4 animationsgenerate_notification
Generate user fieldsgenerate_userFields
CaPO4 glossary server moduleglossaryCaPO4
CaPO4 glossary UI moduleglossaryCaPO4Ui
Help server modulehelpCaPO4
Help UI modulehelpCaPO4Ui
Info server moduleinfos
Info UI moduleinfosUi
Create a switch input for infosUiinfoSwitch
Produce plots related to vitamin D3 deficiency (hypoD3)make_plot_hypoD3
Produce plots related to hypoparathyroidism (hypopara)make_plot_hypopara
Produce plots related to primary hyperparathyroidism (php1)make_plot_php1
carousel containermyCarousel
CaPO4 Network server modulenetworkCaPO4
CaPO4 Network UI modulenetworkCaPO4Ui
CaPO4 Network Options server modulenetworkOptions
CaPO4 Network Options UI modulenetworkOptionsUi
plot box server moduleplotBox
plot box UI moduleplotBoxUi
Launch the virtual patient simulatorrun_CaPO4Sim
Dashboard skin selector, server sideskinSelect
Dashboard skin selector, ui sideskinSelectUi
CaPO4 user info server moduleuserInfo
CaPO4 user info UI moduleuserInfoUi
Create a video server logicvideo
Create a movie UI modulevideoUi